SNP Report

Basic Info

Name	rs211105 dbSNP Ensembl
Location	chr11:18033757 - 18033757(1)
Variant Alleles	T/G
Ancestral Allele	T
Minor Allele	G
Minor Allele Frequence	0.153754
Functional Annotation	intron_variant; NMD_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000250018, ENST00000417164, ENST00000528338); NMD_transcript_variant(ENST00000417164)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Lai, T. J.,2005	A/C		chi-squared test: genotype, X²=0.232, P-value = 0...... chi-squared test: genotype, X²=0.232, P-value = 0.89; allele, X²=0.207, P-value = 0.649 More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
TPH1	tryptophan hydroxylase 1	11p15.3-p14	14(5/9/0)

SNPs in LD with rs211105 (count: 1) View in gBrowse (chr11:18033757..18034678 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs172423		intron_variant; NMD_transcript_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)