SNP Report

Basic Info

Name	rs2108977 dbSNP Ensembl
Location	chr11:18019049 - 18019049(1)
Variant Alleles	T/C
Minor Allele	C
Minor Allele Frequence	0.437101
Functional Annotation	3_prime_UTR_variant; downstream_gene_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000250018); downstream_gene_variant(ENST00000417164, ENST00000525406); intron_variant(ENST00000525523); non_coding_transcript_variant(ENST00000525523)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Lai, T. J.,2005	C/T		chi-squared test: genotype, X²=3.58, P-value = 0....... chi-squared test: genotype, X²=3.58, P-value = 0.167; allele, X²=2.13, P-value = 0.144 More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
TPH1	tryptophan hydroxylase 1	11p15.3-p14	14(5/9/0)

SNPs in LD with rs2108977 (count: 0) View in gBrowse (chr11:18019049..18019049 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)