SNP Report

Basic Info

Name	rs2057072 dbSNP Ensembl
Location	chr20:42603572 - 42603572(1)
Variant Alleles	C/T
Ancestral Allele	T
Minor Allele	T
Minor Allele Frequence	0.183506
Functional Annotation	intron_variant; NMD_transcript_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000356100, ENST00000373184, ENST00000373187, ENST00000373190, ENST00000373193, ENST00000373198, ENST00000373201, ENST00000617474); NMD_transcript_variant(ENST00000617474); upstream_gene_variant(ENST00000446195)
No. of Studies	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
PTPRT	protein tyrosine phosphatase, receptor type, T	20q12-q13	2(0/1/1)

SNPs in LD with rs2057072 (count: 0) View in gBrowse (chr20:42603572..42603572 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)