BDgene

SNP Report

Basic Info
Name rs2048876 dbSNP Ensembl
Location chr2:112709756 - 112709756(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.47504
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Gonzalez, S., 2014 Test for linkage: LOD=0.42, P-value=0.59; Test for associ...... Test for linkage: LOD=0.42, P-value=0.59; Test for association: LOD=2.54, P-value=6.20E-04; Test for other linked variants: LOD=0.64, P-value=0.23 More... Three other SNPs in Chromosome 2 had significant p-values: r...... Three other SNPs in Chromosome 2 had significant p-values: rs1864474 located within SH3RF3 gene, rs2048876 within NT5DC4, and rs708670 within STEAP3. More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NT5DC4 5'-nucleotidase domain containing 4 2q13 1(0/0/1)

SNPs in LD with rs2048876 (count: 0) View in gBrowse (chr2:112709756..112709756 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016