BDgene

SNP Report

Basic Info
Name rs203368 dbSNP Ensembl
Location chr12:119778553 - 119778553(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.495807
Functional Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000488203); intron_variant(ENST00000261833, ENST00000392520, ENST00000392521, ENST00000536325, ENST00000537607, ENST00000545913, ENST00000612548); non_coding_transcript_variant(ENST00000537607, ENST00000545913)
No. of Studies 2 (Positive: 1; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Yosifova, A.,2009 C/T Allelic association: P-value = 0.47 Allelic association: P-value = 0.47 No significant association was observed No significant association was observed Negative
Lyons-Warren, A.,2005 G/A FBAT: P-value = 0.020 FBAT: P-value = 0.020 Significant associations were found . Significant associations were found . Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CIT citron rho-interacting serine/threonine kinase 12q24.23 2(1/1/0)

SNPs in LD with rs203368 (count: 30) View in gBrowse (chr12:119772466..119801389 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 30)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016