BDgene

SNP Report

Basic Info
Name rs2023454 dbSNP Ensembl
Location chr20:54650572 - 54650572(1)
Variant Alleles C/G
Ancestral Allele C
Minor Allele G
Minor Allele Frequence 0.122804
Functional Annotation 3_prime_UTR_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000262593, ENST00000395939)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Liu, X.,2010 C/G C Association analyses: in the right amygdala (P-value = 4.88...... Association analyses: in the right amygdala (P-value = 4.88E-07, FDR = 0.05) More... This SNP was associated with amygdala activation under the h...... This SNP was associated with amygdala activation under the hostility contrast in the right amygdala. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DOK5 docking protein 5 20q13.2 1(1/0/0)

SNPs in LD with rs2023454 (count: 0) View in gBrowse (chr20:54650572..54650572 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016