SNP Report

Basic Info

Name	rs2020934 dbSNP Ensembl
Location	chr17:30234442 - 30234442(1)
Variant Alleles	A/G
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.494209
Functional Annotation	intron_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000261707, ENST00000394821, ENST00000401766); upstream_gene_variant(ENST00000577420)
No. of Studies	2 (Positive: 0; Negative: 2; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 2)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Mansour, H. A.,2005	C/T		Pittsburgh BD1 sample: trends test for case-control analysis...... Pittsburgh BD1 sample: trends test for case-control analysis, P-value = 0.541; TDT T/NT=16/26; STEP-BD sample: trends test for case-control analysis, P-value = Pittsburgh BD1 sample: trends test for case-control analysis, P-value = 541; TDT T/NT=16/26 More...	No significant association was observed. No significant association was observed.	Negative
Ikeda, M., 2006			allelic P-value = 0.912, genotypic P-value = 0.867, Power ca...... allelic P-value = 0.912, genotypic P-value = 0.867, Power calculation GRR=1.71 More...	No associations of 'tagging' marker with BP was found. No associations of 'tagging' marker with BP was found.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SLC6A4	solute carrier family 6 (neurotransmitter transporter), member 4	17q11.2	44(18/26/0)

SNPs in LD with rs2020934 (count: 0) View in gBrowse (chr17:30234442..30234442 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Ikeda, M., 2006	allelic P-value = 0.594, genotypic P-value = 0.161, Power calculation GRR=1.51	No associations of 'tagging' marker with SCZ was found.	Negative

Overlap with MDD from cross-disorder studies (count: 0)