SNP Report

Basic Info

Name	rs2020933 dbSNP Ensembl
Location	chr17:30234737 - 30234737(1)
Variant Alleles	A/T
Ancestral Allele	T
Minor Allele	T
Minor Allele Frequence	0.152756
Functional Annotation	intron_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000261707, ENST00000394821, ENST00000401766); upstream_gene_variant(ENST00000577420)
No. of Studies	2 (Positive: 0; Negative: 2; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 2)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Alaerts, M.,2009	A/T		Allelic association P-value = 0.70; Genotypic association P-...... Allelic association P-value = 0.70; Genotypic association P-value = 0.71 More...	No significant association was observed No significant association was observed	Negative
Mansour, H. A.,2005	A/T		Pittsburgh BD1 sample: trends test for case-control analysis...... Pittsburgh BD1 sample: trends test for case-control analysis, P-value = 0.954; TDT T/NT= 4/4; STEP-BD sample: trends test for case-control analysis, P-value = Pittsburgh BD1 sample: trends test for case-control analysis, P-value = 0.954; TDT T/NT= 4/4 More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SLC6A4	solute carrier family 6 (neurotransmitter transporter), member 4	17q11.2	44(18/26/0)

SNPs in LD with rs2020933 (count: 1) View in gBrowse (chr17:30228407..30234737 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs16965628		intron_variant	0.825[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)