SNP Report

Basic Info

Name	rs2016520 dbSNP Ensembl
Location	chr6:35411001 - 35411001(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	C
Minor Allele Frequence	0.229034
Functional Annotation	5_prime_UTR_variant; intron_variant.
Consequence to Transcript	5_prime_UTR_variant(ENST00000311565, ENST00000337400, ENST00000360694, ENST00000418635); intron_variant(ENST00000448077)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Zandi, P. P, 2008 (a)	A/G		Allelic P-value = 0.004 Allelic P-value = 0.004		Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
PPARD	peroxisome proliferator-activated receptor delta	6p21.2	1(1/0/0)

SNPs in LD with rs2016520 (count: 5) View in gBrowse (chr6:35401307..35411001 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs9470015	intron_variant	0.832[CEU]
rs2267669	intron_variant	0.843[CEU]; 0.849[TSI]
rs2038067	intron_variant	0.882[CEU]; 0.865[TSI]
rs2267668	intron_variant	0.843[CEU]; 0.849[TSI]
rs2038068	intron_variant	0.836[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)