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SNP Report
Basic Info
| Name | rs2000959 dbSNP Ensembl | ||
|---|---|---|---|
| Location | chr11:20637133 - 20637133(1) | ||
| Variant Alleles | C/A | ||
| Ancestral Allele | C | ||
| Minor Allele | A | ||
| Minor Allele Frequence | 0.339058 | ||
| Functional Annotation | intron_variant; NMD_transcript_variant; non_coding_transcript_variant. | ||
| Consequence to Transcript | intron_variant(ENST00000298923, ENST00000525748, ENST00000528440); NMD_transcript_variant(ENST00000298923); non_coding_transcript_variant(ENST00000528440) | ||
| No. of Studies | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
| Overlap with SZ? | YES | ||
| Overlap with MDD? | NO | ||
SNP related studies (count: 1)
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Studies (Positive/Negative/Trend)  |
|---|---|---|---|
| SLC6A5 | solute carrier family 6 (neurotransmitter transporter), member 5 | 11p15.1 | 1(0/1/0) |
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 5)
Overlap with SZ from cross-disorder studies (count: 1)
| Reference | Statistical Result | Description | Result Category |
|---|---|---|---|
| Jamra, R. A., 2006 (b) | data not shown | In the single-marker analysis, none of the analyzed variants revealed a significant association with disease. | Negative |
Overlap with MDD from cross-disorder studies (count: 0)