BDgene

SNP Report

Basic Info
Name rs1983527 dbSNP Ensembl
Location chr21:40848062 - 40848062(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.379393
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000400454)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Amano, K., 2008 T/C Genotypic P-value = 0.9365, allelic P-value = 0.9270 for BD ...... Genotypic P-value = 0.9365, allelic P-value = 0.9270 for BD when compared with controls More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DSCAM Down syndrome cell adhesion molecule 21q22.2-q22.3 3(1/2/0)

SNPs in LD with rs1983527 (count: 4) View in gBrowse (chr21:40840312..40852194 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 4)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
To view this website normally, please make sure to allow Flash to run from the local filesystem in the security settings panel.
Last update: March 31, 2016