BDgene

SNP Report

Basic Info
Name rs1954209 dbSNP Ensembl
Location chr14:54516669 - 54516669(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.0479233
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000216420, ENST00000554791, ENST00000556216, ENST00000557184, ENST00000557317, ENST00000557512, ENST00000557755); NMD_transcript_variant(ENST00000554791, ENST00000557755); non_coding_transcript_variant(ENST00000556216, ENST00000557184, ENST00000557512)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 A/G P-value=6.33E-05 P-value=6.33E-05 Top 132 SNPs (showing suggestive association to BD in our CA...... Top 132 SNPs (showing suggestive association to BD in our CAMH family cohort: p<0.0001). More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CGRRF1 cell growth regulator with ring finger domain 1 14q22.2 1(0/1/0)

SNPs in LD with rs1954209 (count: 0) View in gBrowse (chr14:54516669..54516669 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)