SNP Report

Basic Info

Name	rs1948066 dbSNP Ensembl
Location	chr15:88047262 - 88047262(1)
Variant Alleles	C/T
Ancestral Allele	T
Minor Allele	T
Minor Allele Frequence	0.297125
Functional Annotation	intron_variant; NMD_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000317501, ENST00000355254, ENST00000357724, ENST00000360948, ENST00000394480, ENST00000540489, ENST00000542733, ENST00000557856, ENST00000558306, ENST00000558676, ENST00000626019, ENST00000629765); NMD_transcript_variant(ENST00000558306)
No. of Studies	2 (Positive: 1; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 2)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Feng, Y., 2008		T	TDT P-value = 0.701, X²(df=1)=0.147 TDT P-value = 0.701, X²(df=1)=0.147		Negative
Athanasiu, L.,2011	T/C		Allelic association: OR=1.387, P-value = 1.96E-02, P-value(t...... Allelic association: OR=1.387, P-value = 1.96E-02, P-value(trend)=2.21E-02 More...	Significant associations were found . Significant associations were found .	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NTRK3	neurotrophic tyrosine kinase, receptor, type 3	15q24-q25	2(2/0/0)

SNPs in LD with rs1948066 (count: 0) View in gBrowse (chr15:88047262..88047262 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)