||chr10:60540625 - 60540625(1)
|Minor Allele Frequence
||intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
|Consequence to Transcript
||intron_variant(ENST00000373827, ENST00000503366, ENST00000510382, ENST00000622427); NMD_transcript_variant(ENST00000622427); non_coding_transcript_variant(ENST00000510382)
|No. of Studies
||5 (Positive: 3; Negative: 2; Trend: 0)
|Overlap with SZ?
|Overlap with MDD?
SNP related studies (count: 5)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
SNP related genes (count: 1)
Literature-origin SNPs (count: 0)
LD-proxies (count: 8)
Overlap with SZ from cross-disorder studies (count: 2)
|Lim C.H., 2014
||All ethnicities: OR=0.86, 95%CI =0.71-1.04, P-value=0.123; Malay: OR=0.60, 95%CI =0.41-0.89, P-value=0.012; Chinese: OR=0.87, 95%CI =0.66-1.15, P-value=0.334; Indian: OR=1.21, 95%CI =0.79-1.83, P-value=0.384
||rs1938526 was found to be significantly associated with BPD and SZ.
||SCOPE sample:MAF=0.073, Cochrane-Mantel-Haenszel test P-value = 0.95, Bonferroni corrected P-value = 1, OR (95%CI)=0.99(0.81-1.22);Icelandic sample:MAF(affected)=0.06, MAF(unaffected)=0.058, allelic P-value = 0.32, Bonferroni corrected P-value = 0.96, OR (95%CI)=1.03(0.81-1.31)
||No significant association was observed.
Overlap with MDD from cross-disorder studies (count: 0)