SNP Report

Basic Info

Name	rs1930961 dbSNP Ensembl
Location	chr22:25479298 - 25479298(1)
Variant Alleles	T/C
Ancestral Allele	C
Minor Allele	C
Minor Allele Frequence	0.260583
Functional Annotation	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000354451, ENST00000509460); non_coding_transcript_exon_variant(ENST00000609475); non_coding_transcript_variant(ENST00000354451, ENST00000509460, ENST00000609475)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Goes, F. S.,2012		C	OR = 0.72,P-value(Meta) = 0.00000949 OR = 0.72,P-value(Meta) = 0.00000949	Suggestive association was found. Suggestive association was found.	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CRYBB2P1	crystallin, beta B2 pseudogene 1	22q11.2-q12.1	1(0/0/1)

SNPs in LD with rs1930961 (count: 21) View in gBrowse (chr22:25449888..25510379 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 21)

rs_ID	Functional Annotation	r²[population]
rs5996945	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs9624836	intron_variant; non_coding_transcript_variant	0.877[CHB]
rs6004667	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs1930966	intron_variant; non_coding_transcript_variant	0.877[CHB]
rs7285549	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs760554	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs6004658	downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	0.877[CHB]
rs6004672	intron_variant; non_coding_transcript_variant	0.877[CHB]
rs760555	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	1.0[CHB]; 0.927[CHD]; 1.0[JPT]
rs6004668	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs6004652	intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.877[CHB]
rs6004662	downstream_gene_variant; intron_variant; non_coding_transcript_variant	0.877[CHB]
rs16980314	intron_variant; non_coding_transcript_variant	0.877[CHB]
rs11913964	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs997872	downstream_gene_variant; intron_variant; non_coding_transcript_variant	0.877[CHB]
rs11912320	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CHB]
rs8141065	intron_variant; non_coding_transcript_variant	0.877[CHB]
rs5996938	intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.877[CHB]
rs6004673	intron_variant; non_coding_transcript_variant	0.877[CHB]
rs6519611	intron_variant; non_coding_transcript_variant	0.877[CHB]
rs6004675	intron_variant; non_coding_transcript_variant	0.877[CHB]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)