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SNP Report
Basic Info
| Name | rs1811017 dbSNP Ensembl | ||
|---|---|---|---|
| Location | chr22:23264771 - 23264771(1) | ||
| Variant Alleles | A/G | ||
| Ancestral Allele | A | ||
| Minor Allele | G | ||
| Minor Allele Frequence | 0.331669 | ||
| Functional Annotation | downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant. | ||
| Consequence to Transcript | downstream_gene_variant(ENST00000479188, ENST00000480973); intron_variant(ENST00000305877, ENST00000359540, ENST00000398512, ENST00000427791); non_coding_transcript_exon_variant(ENST00000426721); non_coding_transcript_variant(ENST00000426721); upstream_gene_variant(ENST00000467969) | ||
| No. of Studies | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
| Overlap with SZ? | NO | ||
| Overlap with MDD? | YES | ||
SNP related studies (count: 1)
SNP related genes (count: 3)
| Approved Symbol | Approved Name | Location | No. of Studies (Positive/Negative/Trend)  |
|---|---|---|---|
| BCR | breakpoint cluster region | 22q11 | 2(1/1/0) |
| FBXW4P1 | F-box and WD repeat domain containing 4 pseudogene 1 | 22q11 | Mapped by Literature SNP |
| RN7SL263P | RNA, 7SL, cytoplasmic 263, pseudogene | 22q11.23 | Mapped by Literature SNP |
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 24)
Overlap with SZ from cross-disorder studies (count: 0)
Overlap with MDD from cross-disorder studies (count: 1)
| Reference | Statistical Result | Description | Result Category |
|---|---|---|---|
| Hashimoto, R.,2005(a) | Allelic association:for MDD, P-value > 0.05 | No significant associations were found in MDD. | Negative |