BDgene

SNP Report

Basic Info
Name rs1805502 dbSNP Ensembl
Location chr12:13561247 - 13561247(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.276757
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant; intron_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000609686); downstream_gene_variant(ENST00000628166, ENST00000636207); intron_variant(ENST00000637214)
No. of Studies 2 (Positive: 0; Negative: 2; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Yosifova, A.,2009 A/G Allelic association: P-value = 0.066 Allelic association: P-value = 0.066 No significant association was observed No significant association was observed Negative
Zhao, Q.,2011 A/G X2 test: allele, OR(95%CI)=1.11(0.89-1.39), X X2 test: allele, OR(95%CI)=1.11(0.89-1.39), X2=0.818, P-value = 0.366, genotype, X2=0.884, P-value = 0.643 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B 12p13.1 8(4/4/0)

SNPs in LD with rs1805502 (count: 21) View in gBrowse (chr12:13545708..13660336 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 21)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016