BDgene

SNP Report

Basic Info
Name rs1800778 dbSNP Ensembl
Location chr5:138465324 - 138465324(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.0123802
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000239938)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Gallitano, A. L.,2012 Association analysis: FBAT, P-value > 0.05 Association analysis: FBAT, P-value > 0.05 No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
EGR1 early growth response 1 5q23-q31 1(0/1/0)

SNPs in LD with rs1800778 (count: 0) View in gBrowse (chr5:138465324..138465324 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)