SNP Report

Basic Info

Name	rs1799938 dbSNP Ensembl
Location	chr17:67056188 - 67056188(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.0944489
Functional Annotation	missense_variant. Polyphen Annotation: possibly damaging(ENST00000226021) SIFT Annotation: deleterious(ENST00000226021)
Consequence to Transcript	missense_variant(ENST00000226021)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Jan, W. C., 2014	G/A		OR=2, 95%CI=0.18-22.24, P-value=0.57 for BD-I; OR=1.2, 95%CI...... OR=2, 95%CI=0.18-22.24, P-value=0.57 for BD-I; OR=1.2, 95%CI=0.61-1.68, P-value=0.59 for BD-II. More...	Results of single marker association tests. Results of single marker association tests.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CACNG1	calcium channel, voltage-dependent, gamma subunit 1	17q24	1(0/1/0)

SNPs in LD with rs1799938 (count: 1) View in gBrowse (chr17:67052521..67056188 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs16960501		intron_variant	0.811[CHB]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)