SNP Report

Basic Info

Name	rs17880686 dbSNP Ensembl
Location	chr4:186155978 - 186155978(1)
Variant Alleles	T/C
Ancestral Allele	T
Minor Allele Frequence	0.0
Functional Annotation	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000504330, ENST00000509574, ENST00000510790, ENST00000513212); intron_variant(ENST00000227065, ENST00000356371, ENST00000389354, ENST00000502970, ENST00000503432, ENST00000513030, ENST00000514153, ENST00000514829, ENST00000515078); non_coding_transcript_variant(ENST00000513030, ENST00000514829, ENST00000515078); upstream_gene_variant(ENST00000504462)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Blair, I. P.,2005	T/C		X² goodness of fit tests: MAF=0.03, Genotype P-va...... X² goodness of fit tests: MAF=0.03, Genotype P-value = 0.1, Allele P-value = 0.1 More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
FAM149A	family with sequence similarity 149, member A	4q35.1	1(0/1/0)

SNPs in LD with rs17880686 (count: 0) View in gBrowse (chr4:186155978..186155978 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)