BDgene

SNP Report

Basic Info
Name rs17746001 dbSNP Ensembl
Location chr4:179734472 - 179734472(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.0672923
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Bergen, S. E.,2012 T logistic regression: OR=2.03, P-value = 3.22E-07 logistic regression: OR=2.03, P-value = 3.22E-07 No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 0)

SNPs in LD with rs17746001 (count: 1) View in gBrowse (chr4:179734472..179743461 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Bergen, S. E.,2012 logistic regression:P-value > E-05 No significant association was observed in SZ. Negative

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016