BDgene

SNP Report

Basic Info
Name rs17690703 dbSNP Ensembl
Location chrCHR_HSCHR17_2_CTG5:45859549 - 45859549(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.123003
Functional Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000329196); intron_variant(ENST00000579244, ENST00000579599, ENST00000634876); non_coding_transcript_variant(ENST00000579244, ENST00000579599, ENST00000634876); upstream_gene_variant(ENST00000581125, ENST00000610319, ENST00000628274, ENST00000629948, ENST00000628274, ENST00000629948, ENST00000630938, ENST00000621383, ENST00000632082, ENST00000633517, ENST00000632082, ENST00000633517, ENST00000633458)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Ceulemans, S.,2011 T/C Single SNP analyses: Permuted P-value = 0.3723, Odds Ratio=1...... Single SNP analyses: Permuted P-value = 0.3723, Odds Ratio=1.151 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 3)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
MAPT-AS1 MAPT antisense RNA 1 17q21.31 Mapped by Literature SNP
SPPL2C signal peptide peptidase like 2C 17q21.31 Mapped by Literature SNP
CRHR1 corticotropin releasing hormone receptor 1 17q21.31 4(2/2/0)

SNPs in LD with rs17690703 (count: 108) View in gBrowse (chrCHR_HSCHR17_2_CTG5:45661320..46055710 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 108)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016