BDgene

SNP Report

Basic Info
Name rs17542466 dbSNP Ensembl
Location chr6:35646967 - 35646967(1)
Variant Alleles A/C/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.118211
Functional Annotation intron_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000357266, ENST00000536438, ENST00000539068, ENST00000542713); upstream_gene_variant(ENST00000391277)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Ceulemans, S.,2011 G/A Single SNP analyses: Permuted P-value = 0.2424, Odds Ratio=0...... Single SNP analyses: Permuted P-value = 0.2424, Odds Ratio=0.8639 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
FKBP5 FK506 binding protein 5 6p21.31 5(1/4/0)

SNPs in LD with rs17542466 (count: 4) View in gBrowse (chr6:35554368..35703874 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 4)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)