BDgene

SNP Report

Basic Info
Name rs17169582 dbSNP Ensembl
Location chr5:135979479 - 135979479(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.144369
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Scott, L. J.,2009 G/A NIMH/Pritzker: OR (95% CI)=1.21(0.94-1.55), P-value = 0.14; ...... NIMH/Pritzker: OR (95% CI)=1.21(0.94-1.55), P-value = 0.14; GSK(reduced sample): OR (95% CI)=1.11(0.86-1.43), P-value = 0.42; WTCCC: OR (95% CI)=1.3(1.16-1.46), P-value = 0.0000075; 3-study meta-analysis: OR (95% CI)=1.26(1.14-1.39), P-value = 0.0000098; Heterogeneity: I2%=0, P-value = 0.5 More... Trend

SNP related genes (count: 0)

SNPs in LD with rs17169582 (count: 11) View in gBrowse (chr5:135911343..135987031 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 11)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)