BDgene

SNP Report

Basic Info
Name rs17125698 dbSNP Ensembl
Location chr14:89329326 - 89329326(1)
Variant Alleles C/A
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.191494
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000261302, ENST00000345097, ENST00000553353, ENST00000553840, ENST00000554005, ENST00000555353, ENST00000555658, ENST00000556916, ENST00000557258, ENST00000557718, ENST00000615335); NMD_transcript_variant(ENST00000554005, ENST00000557718); non_coding_transcript_variant(ENST00000555658)
No. of Studies 2 (Positive: 0; Negative: 2; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Baum, A. E., 2008 (b) C Random effects P-value = 0.007; DerSimonian-Laird (random e...... Random effects P-value = 0.007; DerSimonian-Laird (random effects) OR (95% CI)=1.16 (1.04, 1.28) More... Negative
Baum, A. E., 2008 (a) C P-value = 0.028 when genotyped individually in the test samp...... P-value = 0.028 when genotyped individually in the test sample (NIMH); P-value = 0.049 when individually genotyped in the Replication sample (German); P-value = 0.003 in the combined dataset. OR (95% CI)=1.26 (1.08-1.47) More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
FOXN3 forkhead box N3 14q32.11 1(1/0/0)

SNPs in LD with rs17125698 (count: 9) View in gBrowse (chr14:89308644..89338163 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 9)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016