BDgene

SNP Report

Basic Info
Name rs16949856 dbSNP Ensembl
Location chr15:45980660 - 45980660(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.164137
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Huang, J.,2010 T/C Omnibus GWAS Test: P-value > 5E-05 Omnibus GWAS Test: P-value > 5E-05 No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 0)

SNPs in LD with rs16949856 (count: 0) View in gBrowse (chr15:45980660..45980660 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Huang, J.,2010 Omnibus GWAS Test:P-value > 5E-05 No significant association was observed. Negative

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Huang, J.,2010 Omnibus GWAS Test:P-value = 0.0000362, best-fit model is Depressive disorders Suggestive association was found. Trend

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
To view this website normally, please make sure to allow Flash to run from the local filesystem in the security settings panel.
Last update: March 31, 2016