SNP Report

Basic Info

Name	rs16941328 dbSNP Ensembl
Location	chr15:88148000 - 88148000(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.181909
Functional Annotation	intron_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000317501, ENST00000355254, ENST00000357724, ENST00000360948, ENST00000394480, ENST00000540489, ENST00000542733, ENST00000557856, ENST00000558676, ENST00000559188, ENST00000626019, ENST00000629765); upstream_gene_variant(ENST00000558776)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Athanasiu, L.,2011	A/G		Allelic association: OR=1.596, P-value = 6.06E-03, P-value(t...... Allelic association: OR=1.596, P-value = 6.06E-03, P-value(trend)=6.12E-03 More...	Significant associations were found . Significant associations were found .	Positive

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NTRK3	neurotrophic tyrosine kinase, receptor, type 3	15q24-q25	2(2/0/0)
MED28P6	mediator complex subunit 28 pseudogene 6	15q25.3	Mapped by Literature SNP

SNPs in LD with rs16941328 (count: 4) View in gBrowse (chr15:88125897..88148000 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs16941323	downstream_gene_variant; intron_variant; upstream_gene_variant	0.923[CEU]
rs17829890	downstream_gene_variant; intron_variant; upstream_gene_variant	0.923[CEU]
rs17829939	downstream_gene_variant; intron_variant; upstream_gene_variant	0.923[CEU]
rs1426301	intron_variant; NMD_transcript_variant; non_coding_transcript_variant	0.923[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)