BDgene

SNP Report

Basic Info
Name rs1655285 dbSNP Ensembl
Location chr1:231563728 - 231563728(1)
Variant Alleles G/C
Ancestral Allele G
Minor Allele C
Minor Allele Frequence 0.0740815
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000413309); intron_variant(ENST00000366639, ENST00000475168, ENST00000602567, ENST00000602634, ENST00000602885, ENST00000602956, ENST00000602962); NMD_transcript_variant(ENST00000602567, ENST00000602634, ENST00000602885, ENST00000602956, ENST00000602962); non_coding_transcript_variant(ENST00000475168)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Palo, O. M., 2007 G/C P-value = 0.025 in all patients, P-value = 0.708 in males, P...... P-value = 0.025 in all patients, P-value = 0.708 in males, P-value = 0.088 in females, with bipolar spectrum disorder More... observed weak evidence for association of rs1655285 at intro...... observed weak evidence for association of rs1655285 at intron 5 of TSNAX with bipolar spectrum disorder More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TSNAX translin-associated factor X 1q42.2 4(3/1/0)

SNPs in LD with rs1655285 (count: 0) View in gBrowse (chr1:231563728..231563728 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)