SNP Report

Basic Info

Name	rs1655285 dbSNP Ensembl
Location	chr1:231563728 - 231563728(1)
Variant Alleles	G/C
Ancestral Allele	G
Minor Allele	C
Minor Allele Frequence	0.0740815
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000413309); intron_variant(ENST00000366639, ENST00000475168, ENST00000602567, ENST00000602634, ENST00000602885, ENST00000602956, ENST00000602962); NMD_transcript_variant(ENST00000602567, ENST00000602634, ENST00000602885, ENST00000602956, ENST00000602962); non_coding_transcript_variant(ENST00000475168)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Palo, O. M., 2007	G/C		P-value = 0.025 in all patients, P-value = 0.708 in males, P...... P-value = 0.025 in all patients, P-value = 0.708 in males, P-value = 0.088 in females, with bipolar spectrum disorder More...	observed weak evidence for association of rs1655285 at intro...... observed weak evidence for association of rs1655285 at intron 5 of TSNAX with bipolar spectrum disorder More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
TSNAX	translin-associated factor X	1q42.2	4(3/1/0)

SNPs in LD with rs1655285 (count: 0) View in gBrowse (chr1:231563728..231563728 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)