SNP Report

Basic Info

Name	rs162802 dbSNP Ensembl
Location	chr3:7679926 - 7679926(1)
Variant Alleles	T/C
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.328075
Functional Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000357716, ENST00000389335, ENST00000389336, ENST00000402647, ENST00000440923, ENST00000463676, ENST00000467425, ENST00000486284); NMD_transcript_variant(ENST00000389335, ENST00000440923, ENST00000467425); non_coding_transcript_variant(ENST00000463676)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Kandaswamy R., 2014	T/C		MAF=0.5 MAF=0.5	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GRM7	glutamate receptor, metabotropic 7	3p26-p25	3(2/1/0)

SNPs in LD with rs162802 (count: 8) View in gBrowse (chr3:7674973..7707427 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs162773	downstream_gene_variant; intron_variant	0.922[CEU]
rs162774	downstream_gene_variant; intron_variant	0.855[CEU]
rs162800	downstream_gene_variant; intron_variant; NMD_transcript_variant	0.822[CEU]; 0.978[TSI]
rs6782528	intron_variant; NMD_transcript_variant; non_coding_transcript_variant	0.853[CEU]
rs162772	downstream_gene_variant; intron_variant	0.911[TSI]
rs329043	intron_variant	0.801[TSI]
rs329038	intron_variant; NMD_transcript_variant; non_coding_transcript_variant	0.833[TSI]
rs162785	downstream_gene_variant; intron_variant; NMD_transcript_variant	0.889[CEU]; 1.0[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)