SNP Report

Basic Info

Name	rs1615409 dbSNP Ensembl
Location	chr1:231547671 - 231547671(1)
Variant Alleles	C/A
Ancestral Allele	A
Minor Allele	C
Minor Allele Frequence	0.460264
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000476913); intron_variant(ENST00000366639, ENST00000413309, ENST00000475168, ENST00000602567, ENST00000602634, ENST00000602825, ENST00000602885, ENST00000602956, ENST00000602962); NMD_transcript_variant(ENST00000602567, ENST00000602634, ENST00000602885, ENST00000602956, ENST00000602962); non_coding_transcript_variant(ENST00000475168, ENST00000602825)
No. of Studies	2 (Positive: 0; Negative: 2; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 2)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Palo, O. M., 2007	C/A		P-value = 0.74 in all patients, P-value = 1 in males, P-valu...... P-value = 0.74 in all patients, P-value = 1 in males, P-value = 0.233 in females, with bipolar spectrum disorder More...		Negative
Thomson, P. A.,2005(a)			Single-Marker Analysis: allele frequency, for BP, P-value = ...... Single-Marker Analysis: allele frequency, for BP, P-value = 0.77 More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
TSNAX	translin-associated factor X	1q42.2	4(3/1/0)
DISC1	disrupted in schizophrenia 1	1q42.1	18(10/7/1)

SNPs in LD with rs1615409 (count: 0) View in gBrowse (chr1:231547671..231547671 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Thomson, P. A.,2005(a)	Single-Marker Analysis:allele frequency, for SZ, P-value = 0.86	No significant association was observed.	Negative

Overlap with MDD from cross-disorder studies (count: 0)