SNP Report

Basic Info

Name	rs1565445 dbSNP Ensembl
Location	chr9:85002156 - 85002156(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	G
Minor Allele Frequence	0.301717
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000277120, ENST00000323115, ENST00000376213, ENST00000376214)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Wang, Z., 2013	C/T		allelic P-value=0.579, OR (95 % CI)=0.93 (0.73, 1.19), X allelic P-value=0.579, OR (95 % CI)=0.93 (0.73, 1.19), X²=0.308, df=1; genotypic P-value=0.821, X²=0.394, df=2 More...	For SNP rs1565445, the allele or genotype frequencies of BP ...... For SNP rs1565445, the allele or genotype frequencies of BP I patients also did not significantly differ from the controls. More...	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NTRK2	neurotrophic tyrosine kinase, receptor, type 2	9q22.1	3(1/1/1)

SNPs in LD with rs1565445 (count: 37) View in gBrowse (chr9:84991960..85023591 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 37)

rs_ID	Functional Annotation	r²[population]
rs7853433	intron_variant	0.946[CHB]; 1.0[JPT]
rs7030960	intron_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs4388524	intron_variant	0.946[CHB]; 1.0[JPT]
rs1490406	intron_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs7023492	intron_variant	0.946[CHB]; 1.0[JPT]
rs4242631	intron_variant	0.94[CHB]; 0.841[JPT]
rs1565447	intron_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs10116750	intron_variant	0.942[CHB]; 1.0[JPT]
rs4142910	intron_variant	0.946[CHB]; 1.0[CHD]; 1.0[JPT]
rs7045296	intron_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs4636281	intron_variant	0.946[CHB]; 1.0[JPT]
rs12000011	intron_variant	1.0[CHB]; 1.0[JPT]
rs4388525	intron_variant	0.942[CHB]; 1.0[JPT]
rs1490404	intron_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs4400465	intron_variant	0.821[CHB]; 1.0[JPT]
rs6559844	intron_variant	0.946[CHB]; 1.0[JPT]
rs1490405	intron_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs7035804	intron_variant	1.0[CHB]; 1.0[JPT]
rs4394478	intron_variant	0.947[CHB]; 1.0[CHD]; 1.0[JPT]
rs7019555	intron_variant	0.946[CHB]; 0.951[CHD]; 1.0[JPT]
rs4305979	intron_variant	0.946[CHB]; 1.0[JPT]
rs4877895	intron_variant	1.0[CHB]; 0.951[CHD]; 1.0[JPT]
rs729560	intron_variant	0.952[CHD]; 0.942[JPT]
rs1490403	3_prime_UTR_variant; downstream_gene_variant	1.0[JPT]
rs4631550	intron_variant	1.0[CHB]; 0.951[CHD]; 1.0[JPT]
rs4242630	intron_variant	0.946[CHB]; 1.0[JPT]
rs1387925	intron_variant	0.841[CHB]; 0.944[JPT]
rs4556163	intron_variant	0.943[CHB]; 1.0[JPT]
rs4242632	intron_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs923559	intron_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs10123600	intron_variant	0.946[CHB]; 1.0[CHD]; 1.0[JPT]
rs12553180	intron_variant	1.0[CHB]; 1.0[JPT]
rs1490407	intron_variant	1.0[CHB]; 1.0[JPT]
rs10125469	intron_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs1565446	intron_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs7036165	intron_variant	1.0[CHB]; 1.0[JPT]
rs7857957	intron_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)