BDgene

SNP Report

Basic Info
Name rs1565366 dbSNP Ensembl
Location chr6:34063906 - 34063906(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.294129
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000374177, ENST00000374181, ENST00000455714, ENST00000535756, ENST00000538487, ENST00000544773, ENST00000609222, ENST00000609278, ENST00000609443, ENST00000609973); NMD_transcript_variant(ENST00000609278); non_coding_transcript_variant(ENST00000609973); upstream_gene_variant(ENST00000545715, ENST00000609860)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Yosifova, A.,2009 A/G Allelic association: 1st screening: P-value = 0.029, 2nd scr...... Allelic association: 1st screening: P-value = 0.029, 2nd screening: P-value = 0.72, total: P-value = 0.17 More... Significant association was observed in 1st screening. Significant association was observed in 1st screening. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GRM4 glutamate receptor, metabotropic 4 6p21.3 2(2/0/0)

SNPs in LD with rs1565366 (count: 4) View in gBrowse (chr6:34045134..34063906 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 4)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016