SNP Report

Basic Info

Name	rs1554338 dbSNP Ensembl
Location	chr11:45885279 - 45885279(1)
Variant Alleles	A/G
Ancestral Allele	G
Minor Allele	G
Minor Allele Frequence	0.183506
Functional Annotation	downstream_gene_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000417225, ENST00000443527, ENST00000488962, ENST00000616080, ENST00000616623); upstream_gene_variant(ENST00000241014)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Mansour, H. A.,2009	A/G		Single SNP-based analyses: Trends test P-value = 0.031 in BP...... Single SNP-based analyses: Trends test P-value = 0.031 in BPI More...	Significant association was observed Significant association was observed	Positive

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CRY2	cryptochrome circadian clock 2	11p11.2	5(3/2/0)
MAPK8IP1	mitogen-activated protein kinase 8 interacting protein 1	11p11.2	Mapped by Literature SNP

SNPs in LD with rs1554338 (count: 0) View in gBrowse (chr11:45885279..45885279 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Mansour, H. A.,2009	Single SNP-based analyses:Trends test P-value = 0.411 in SZ	No significant association was observed	Negative

Overlap with MDD from cross-disorder studies (count: 0)