BDgene

SNP Report

Basic Info
Name rs1529289 dbSNP Ensembl
Location chr2:124158066 - 124158066(1)
Variant Alleles G/T
Ancestral Allele G
Minor Allele T
Minor Allele Frequence 0.282149
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000431078)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Djurovic, S.,2010 Combined analysis: for TOP Norway (discovery sample): P-valu...... Combined analysis: for TOP Norway (discovery sample): P-value = 0.001187, OR=0.64 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CNTNAP5 contactin associated protein-like 5 2q14.1 2(0/2/0)

SNPs in LD with rs1529289 (count: 11) View in gBrowse (chr2:124101459..124165241 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 11)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016