BDgene

SNP Report

Basic Info
Name rs1503433 dbSNP Ensembl
Location chr3:87988050 - 87988050(1)
Variant Alleles C/A
Ancestral Allele A
Minor Allele C
Minor Allele Frequence 0.360224
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000319595)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Gratacos, M.,2009 Single SNP association: In control and bipolar disorder samp...... Single SNP association: In control and bipolar disorder samples: Log-additive Model, P-value = 0.0191(corrected by genomic control, Reus), P-value = 0.0205(passed multiple testing correction, Madrid); OR(95% CI): Reus: 1.35 (1.08-1.69), Madrid: 1.34 (1.05-1.72) More... Nominal statistical significance was observed as P-value < 0...... Nominal statistical significance was observed as P-value < 0.05 using both control sets under the same genotypic mode. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
HTR1F 5-hydroxytryptamine (serotonin) receptor 1F, G protein-coupled 3p12 1(1/0/0)

SNPs in LD with rs1503433 (count: 26) View in gBrowse (chr3:87979914..88040822 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 26)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016