SNP Report

Basic Info

Name	rs1497020 dbSNP Ensembl
Location	chr8:20144915 - 20144915(1)
Variant Alleles	G/A
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.285343
Functional Annotation	3_prime_UTR_variant; downstream_gene_variant; NMD_transcript_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000265808, ENST00000276373, ENST00000437980, ENST00000440926, ENST00000517776); downstream_gene_variant(ENST00000381608, ENST00000519026, ENST00000519171); NMD_transcript_variant(ENST00000517776)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Lohoff, F. W., 2006	A/G		genotypic P-value = 0.1, allelic P-value = 0.205 for BPI ; ...... genotypic P-value = 0.1, allelic P-value = 0.205 for BPI ; genotypic P-value = 0.323, allelic P-value = 0.45 for BP I psychosis More...		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SLC18A1	solute carrier family 18 (vesicular monoamine transporter), member 1	8p21.3	3(2/1/0)

SNPs in LD with rs1497020 (count: 4) View in gBrowse (chr8:20137681..20144915 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs4481613		0.958[CEU]
rs6982939		0.915[CEU]; 0.808[TSI]
rs7003858	downstream_gene_variant	1.0[CEU]; 1.0[TSI]
rs4921691		0.958[CEU]; 0.839[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)