SNP Report

Basic Info

Name	rs1483651 dbSNP Ensembl
Location	chr19:58178467 - 58178467(1)
Variant Alleles	T/G
Ancestral Allele	T
Minor Allele	G
Minor Allele Frequence	0.116813
Functional Annotation	upstream_gene_variant.
Consequence to Transcript	upstream_gene_variant(ENST00000326804, ENST00000345813, ENST00000424679, ENST00000594248, ENST00000600704, ENST00000610905, ENST00000615675, ENST00000617501, ENST00000619307, ENST00000621145)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Xu, W., 2014	C/A		P(unadj)-value=9.70E-06,Â OR (unadj)=1.389,Â P(adj)-value=7....... P(unadj)-value=9.70E-06,Â OR (unadj)=1.389,Â P(adj)-value=7.55E-06,Â OR (adj)=1.41 More...	Top 68 SNPs (showing suggestive association to BD: p<0.0001)...... Top 68 SNPs (showing suggestive association to BD: p<0.0001) in our combined (CAMH and IoP) GWAS. More...	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ZNF274	zinc finger protein 274	19q13.43	2(1/1/0)

SNPs in LD with rs1483651 (count: 6) View in gBrowse (chr19:58177063..58207332 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs12975369	upstream_gene_variant	1.0[CEU]; 0.975[TSI]
rs12982863	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]
rs12977929		0.948[CEU]; 0.975[TSI]
rs11672645	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.948[CEU]; 0.925[TSI]
rs7250280	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	0.896[CEU]; 0.925[TSI]
rs2062251	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)