BDgene

SNP Report

Basic Info
Name rs1472779 dbSNP Ensembl
Location chr2:116378222 - 116378222(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.444888
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Djurovic, S.,2010 Combined analysis: J4for Iceland (replication sample): P-val...... Combined analysis: J4for Iceland (replication sample): P-value = 0.012295, OR=0.85, Stouffer's z value=0.0004 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DDX18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 2q21.2 2(0/2/0)

SNPs in LD with rs1472779 (count: 8) View in gBrowse (chr2:116340497..116378222 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 8)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016