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SNP Report
Basic Info
| Name | rs1468089 dbSNP Ensembl | ||
|---|---|---|---|
| Location | chr22:19827521 - 19827521(1) | ||
| Variant Alleles | G/A | ||
| Ancestral Allele | A | ||
| Minor Allele | G | ||
| Minor Allele Frequence | 0.488019 | ||
| Functional Annotation | intron_variant; non_coding_transcript_variant. | ||
| Consequence to Transcript | intron_variant(ENST00000329517, ENST00000403325, ENST00000405009, ENST00000453108, ENST00000460402, ENST00000481086); non_coding_transcript_variant(ENST00000460402, ENST00000481086) | ||
| No. of Studies | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
| Overlap with SZ? | YES | ||
| Overlap with MDD? | YES | ||
SNP related studies (count: 1)
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Studies (Positive/Negative/Trend)  |
|---|---|---|---|
| GNB1L | guanine nucleotide binding protein (G protein), beta polypeptide 1-like | 22q11.2 | 1(1/0/0) |
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 14)
Overlap with SZ from cross-disorder studies (count: 1)
| Reference | Statistical Result | Description | Result Category |
|---|---|---|---|
| Li, Y.,2011 | For SZ, chi square test:allele P-value = 0.1219 | No significant association was observed. | Negative |
Overlap with MDD from cross-disorder studies (count: 1)
| Reference | Statistical Result | Description | Result Category |
|---|---|---|---|
| Li, Y.,2011 | For MDD, chi square test:allele P-value = 0.731 | No significant association was observed. | Negative |