BDgene

SNP Report

Basic Info
Name rs145228980 dbSNP Ensembl
Location chr2:75161818 - 75161818(1)
Variant Alleles C/G
Ancestral Allele C
Minor Allele G
Minor Allele Frequence 0.00658946
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000305249, ENST00000409848, ENST00000604271); non_coding_transcript_variant(ENST00000604271)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Sharp S.I., 2014 C/G P-value=0.04, OR=0.68, 95%CI=0.48-0.96 P-value=0.04, OR=0.68, 95%CI=0.48-0.96 Significant association was observed. Significant association was observed. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TACR1 tachykinin receptor 1 2p13.1-p12 3(3/0/0)

SNPs in LD with rs145228980 (count: 0) View in gBrowse (chr2:75161818..75161818 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)