SNP Report

Basic Info

Name	rs1435961 dbSNP Ensembl
Location	chr10:78461228 - 78461228(1)
Variant Alleles	G/A
Ancestral Allele	A
Minor Allele	A
Minor Allele Frequence	0.365415
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000421324, ENST00000510550, ENST00000624665, ENST00000634930, ENST00000635422); non_coding_transcript_variant(ENST00000421324, ENST00000510550, ENST00000624665, ENST00000634930, ENST00000635422)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Djurovic, S.,2010			Combined analysis: for TOP Norway (discovery sample): P-valu...... Combined analysis: for TOP Norway (discovery sample): P-value = 0.000994, OR=1.53; for Iceland (replication sample): P-value = 0.009807, OR=0.84, Stouffer's z value=0.0004; for Iceland (replication sample): P-value = 0.009409, OR=0.84, Stouffer's z value=0.0002 More...	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
LINC00856	long intergenic non-protein coding RNA 856	10q22.3	Mapped by Literature SNP

SNPs in LD with rs1435961 (count: 0) View in gBrowse (chr10:78461228..78461228 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)