SNP Report

Basic Info

Name	rs1435403 dbSNP Ensembl
Location	chr15:87893838 - 87893838(1)
Variant Alleles	A/G
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.3127
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000355254, ENST00000357724, ENST00000360948, ENST00000394480, ENST00000557856, ENST00000626019, ENST00000629765)
No. of Studies	2 (Positive: 0; Negative: 2; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 2)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Athanasiu, L.,2011	A/G		Allelic association: OR=0.9756, P-value = 8.76E-01, P-value(...... Allelic association: OR=0.9756, P-value = 8.76E-01, P-value(trend)=8.73E-01 More...	No significant association was observed. No significant association was observed.	Negative
Feng, Y., 2008		A	TDT P-value = 0.12, X²(df=1)=2.421 TDT P-value = 0.12, X²(df=1)=2.421		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NTRK3	neurotrophic tyrosine kinase, receptor, type 3	15q24-q25	2(2/0/0)

SNPs in LD with rs1435403 (count: 2) View in gBrowse (chr15:87893838..87896543 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs10163131		intron_variant	0.845[CEU]
rs3784443		intron_variant	0.946[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)