SNP Report

Basic Info

Name	rs142426358 dbSNP Ensembl
Location	chr5:37814375 - 37814375(1)
Variant Alleles	T/C
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.00519169
Functional Annotation	3_prime_UTR_variant; downstream_gene_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000326524, ENST00000344622, ENST00000620847); downstream_gene_variant(ENST00000381826, ENST00000427982, ENST00000502572, ENST00000510177, ENST00000515058); non_coding_transcript_exon_variant(ENST00000637595); non_coding_transcript_variant(ENST00000637595)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Safari, R., 2014	T/C		P-value=0.36 P-value=0.36	rs142426358 T>C SNP was seen in a female euthymic patient(ca...... rs142426358 T>C SNP was seen in a female euthymic patient(case code:BG056).There was no rs142426358 T>C SNP either in healthy volunteers or in the first degree relatives. There was no significant difference between patients, relatives or healthy volunteers More...	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GDNF	glial cell derived neurotrophic factor	5p13.1-p12	1(1/0/0)
GDNF-AS1	GDNF antisense RNA 1 (head to head)	5p13.2	Mapped by Literature SNP

SNPs in LD with rs142426358 (count: 0) View in gBrowse (chr5:37814375..37814375 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)