SNP Report

Basic Info

Name	rs141939315 dbSNP Ensembl
Location	chr10:60042719 - 60042719(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.00539137
Functional Annotation	missense_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant. Polyphen Annotation: probably damaging(ENST00000280772, ENST00000373820, ENST00000373827, ENST00000610321, ENST00000612776, ENST00000617800); benign(ENST00000355288, ENST00000503366); possibly damaging(ENST00000502769); unknown(ENST00000616444) SIFT Annotation: deleterious - low confidence(ENST00000355288, ENST00000503366, ENST00000502769, ENST00000280772, ENST00000373820, ENST00000373827, ENST00000610321, ENST00000612776, ENST00000617800, ENST00000616444)
Consequence to Transcript	missense_variant(ENST00000355288, ENST00000503366, ENST00000502769, ENST00000280772, ENST00000373820, ENST00000373827, ENST00000610321, ENST00000612776, ENST00000617800, ENST00000616444); non_coding_transcript_exon_variant(ENST00000480699, ENST00000489505); non_coding_transcript_variant(ENST00000480699, ENST00000489505)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Fiorentino A., 2014	C/T		eurMLP=0.2 eurMLP=0.2	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ANK3	ankyrin 3, node of Ranvier (ankyrin G)	10q21	17(13/3/1)

SNPs in LD with rs141939315 (count: 0) View in gBrowse (chr10:60042719..60042719 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)