BDgene

SNP Report

Basic Info
Name rs140701 dbSNP Ensembl
Location chr17:30211514 - 30211514(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.498203
Functional Annotation intron_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000261707, ENST00000394821, ENST00000401766); upstream_gene_variant(ENST00000579221)
No. of Studies 2 (Positive: 0; Negative: 2; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Mansour, H. A.,2005 C/T Pittsburgh BD1 sample: trends test for case-control analysis...... Pittsburgh BD1 sample: trends test for case-control analysis, P-value = 0.668; TDT T/NT=28/28; STEP-BD sample: trends test for case-control analysis, P-value = Pittsburgh BD1 sample: trends test for case-control analysis, P-value = 0.668; TDT T/NT=28/28 More... No significant association was observed. No significant association was observed. Negative
Alaerts, M.,2009 A/G Allelic association P-value = 0.18; Genotypic association P-...... Allelic association P-value = 0.18; Genotypic association P-value = 0.18 More... No significant association was observed No significant association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4 17q11.2 44(18/26/0)

SNPs in LD with rs140701 (count: 32) View in gBrowse (chr17:30017258..30211514 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 32)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016