BDgene

SNP Report

Basic Info
Name rs139759288 dbSNP Ensembl
Location chr2:75171339 - 75171339(1)
Variant Alleles C/A
Ancestral Allele C
Minor Allele Frequence 0.0
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000305249, ENST00000409848, ENST00000604271); non_coding_transcript_variant(ENST00000604271)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Sharp S.I., 2014 C/A P-value=0.05, OR=0.53, 95%CI=0.29-0.98 P-value=0.05, OR=0.53, 95%CI=0.29-0.98 Significant association was observed. Significant association was observed. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TACR1 tachykinin receptor 1 2p13.1-p12 3(3/0/0)

SNPs in LD with rs139759288 (count: 0) View in gBrowse (chr2:75171339..75171339 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)