BDgene

SNP Report

Basic Info
Name rs138881 dbSNP Ensembl
Location chr22:49826834 - 49826834(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.0605032
Functional Annotation intron_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000404760); upstream_gene_variant(ENST00000216267, ENST00000404034, ENST00000438393, ENST00000457780, ENST00000459821, ENST00000494833)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Severinsen, J. E., 2006 (b) G/A P-value = 0.2473 in BD, P-value = 0.1727 in BD and SZ P-value = 0.2473 in BD, P-value = 0.1727 in BD and SZ Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
BRD1 bromodomain containing 1 22q13.33 2(2/0/0)

SNPs in LD with rs138881 (count: 0) View in gBrowse (chr22:49826834..49826834 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Severinsen, J. E., 2006 (b) P-value = 0.2896 in SZ, P-value = 0.1727 in BD and SZ Negative

Overlap with MDD from cross-disorder studies (count: 0)