SNP Report

Basic Info

Name	rs13414801 dbSNP Ensembl
Location	chr2:28067480 - 28067480(1)
Variant Alleles	T/C
Ancestral Allele	T
Minor Allele	T
Minor Allele Frequence	0.49381
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000342045, ENST00000344773, ENST00000361704, ENST00000379624, ENST00000379629, ENST00000379632)
No. of Studies	2 (Positive: 0; Negative: 2; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 2)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Baum, A. E., 2008 (a)		C	P-value = 0.001 when genotyped individually in the test samp...... P-value = 0.001 when genotyped individually in the test sample (NIMH); P-value = 0.913 when individually genotyped in the Replication sample (German); P-value = 0.056 in the combined dataset. OR (95% CI)=NS More...		Negative
Baum, A. E., 2008 (b)		C	Random effects P-value = 0.109; DerSimonian-Laird (random e...... Random effects P-value = 0.109; DerSimonian-Laird (random effects) OR (95% CI)=1.12 (0.97, 1.30) More...		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
BRE	brain and reproductive organ-expressed (TNFRSF1A modulator)	2p23	1(0/1/0)

SNPs in LD with rs13414801 (count: 0) View in gBrowse (chr2:28067480..28067480 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)