BDgene

SNP Report

Basic Info
Name rs132234 dbSNP Ensembl
Location chr22:48707848 - 48707848(1)
Variant Alleles T/A/C
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.308506
Functional Annotation intron_variant; non_coding_transcript_variant; splice_region_variant.
Consequence to Transcript intron_variant(ENST00000336769, ENST00000358295, ENST00000402357, ENST00000406880, ENST00000473898); non_coding_transcript_variant(ENST00000473898); splice_region_variant(ENST00000336769, ENST00000358295, ENST00000402357, ENST00000406880, ENST00000473898)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Severinsen, J. E., 2006 (b) C/T P-value = 0.6271 in BD, P-value = 0.6116 in BD and SZ P-value = 0.6271 in BD, P-value = 0.6116 in BD and SZ Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
FAM19A5 family with sequence similarity 19 (chemokine (C-C motif)-like), member A5 22q13.32 Mapped by Literature SNP

SNPs in LD with rs132234 (count: 12) View in gBrowse (chr22:48706855..48719627 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 12)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Severinsen, J. E., 2006 (b) P-value = 0.7013 in SZ, P-value = 0.6116 in BD and SZ Negative

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016