SNP Report

Basic Info

Name	rs13213152 dbSNP Ensembl
Location	chr6:28381921 - 28381921(1)
Variant Alleles	A/G
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.0175719
Functional Annotation	3_prime_UTR_variant; intron_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000361028); intron_variant(ENST00000396827)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Bergen, S. E.,2012		A	logistic regression: P-value > E-05 logistic regression: P-value > E-05	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ZSCAN12	zinc finger and SCAN domain containing 12	6p21	Mapped by Literature SNP

SNPs in LD with rs13213152 (count: 9) View in gBrowse (chr6:28201463..28398374 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs13195291		0.828[CEU]
rs13213986	intron_variant	1.0[CEU]
rs2232429	intron_variant	1.0[CEU]
rs13217619	intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.828[CEU]
rs13205211	downstream_gene_variant	0.828[CEU]
rs13197633		0.828[CEU]
rs13214023	intron_variant	1.0[TSI]
rs2232426	intron_variant	1.0[CEU]
rs2232423	missense_variant	1.0[CEU]; 1.0[TSI]

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Bergen, S. E.,2012	logistic regression:for SZ full sample, OR=1.42, P-value = 8.43E-06	No significant association was observed in SZ.	Negative

Overlap with MDD from cross-disorder studies (count: 0)